Data from: Genomic analysis of Vanessa tameamea, the threatened Hawaiian endemic butterfly, reveals population genetic structure relevant to conservation efforts
Scripts listed here exemplify those used in the assembly of the Vanessa tameamea genome (Hawaiian Kamehameha butterfly) as found in NCBI BioProjects PRJNA1029194 (female) and PRJNA1029239 (male). Reduced representation sequences from double digest Restriction Associated DNA (ddRAD) are included in BioProject PRJNA428520 and were used for population genetic analyses. All workflows and analyses except for the DAPC (Discriminant Analysis of Principal Components), PCA (Principal Component Analysis), and hierarchical Fst were performed on the United States Department of Agriculture (USDA) - SCINet/Mississippi State University High Performance Computing Cluster (HPC) Atlas and were installed via Conda. The remaining scripts were run in R.
Funding
USDA-ARS: 2040-22430-028-000-D
USDA-ARS: 0201-88888-003-000D
USDA-ARS: 0201-88888-002-000D
History
Data contact name
Arnold, Haley, E.Data contact email
arnoldhaley3@gmail.comPublisher
Ag Data CommonsTemporal Extent Start Date
2023-10-01Theme
- Non-geospatial
ISO Topic Category
- biota
National Agricultural Library Thesaurus terms
Vanessa tameamea; genome assembly; population genetics; genetic analysis; genome; females; males; DNA; discriminant analysis; principal component analysis; USDA; Hawaii; butterflies; models; protocols; threatened species; conservation programsOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 304
Pending citation
- Yes
Related material without URL
Genomic analysis of Vanessa tameamea, the threatened Hawaiian endemic butterfly, reveals population genetic structure relevant to conservation efforts” with authors: Haley E. Arnold, Julian R. Dupuis, Daniel Rubinoff, William P. Haines, Scott M. Geib, and Sheina B. Sim (In Press).Public Access Level
- Public
