Anastrepha ludens genome assembly scripts

https://doi.org/10.15482/USDA.ADC/25762509

workflow

posted on 2024-05-16, 15:16 authored by SHEINA SIMSHEINA SIM

The data in this repository is to provide the scripts used in the assembly of the Anastrepha ludens genome. It can be used to replicate the steps necessary to assemble the genome described in National Center for Biotechnology Information (NCBI) BioProject: <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA803324/" target="_blank">PRJNA803324</a>. This genome assembly workflow was performed on the United States Department of Agriculture (USDA) - SCINet/Mississippi State University High Performance Computing Cluster (HPC) Atlas and installed via Conda.

Funding

USDA-ARS: 2040-22430-028-000-D

USDA-ARS: 0201-88888-003-000D

USDA-ARS: 0201-88888-002-000D

History

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Data contact name

Sim, Sheina B.

Data contact email

sheina.sim@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2024-05-07

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

Anastrepha ludens; genome; National Center for Biotechnology Information; genome assembly; chromosomes

OMB Bureau Code

005:18 - Agricultural Research Service

OMB Program Code

005:040 - National Research

ARS National Program Number

Primary article PubAg Handle

https://handle.nal.usda.gov/10113/9264249

Pending citation

Public Access Level

Public

Usage metrics

Keywords

genome assembly protocol genome assembly genome chromosomes Anastrepha ludens Mexican fruit fly Mexfly

Licence

CC BY 4.0