MAPpoly (v. 0.3.3) Construction of genetic maps in diploids and autopolyploids with even ploidy levels in full-sib families
software
posted on 2025-05-16, 18:40 authored by Marcelo MollinariMarcelo Mollinari, Gabriel de Siqueira Gesteira, Cristiane Taniguti, Jeekin Lau, Oscar Riera-Lizarazu, Guilhereme Pereira, Antonio Augusto Franco Garcia, Zhao-Bang Zeng, Katharine Preedy, Robert Gentleman, Ross IhakaRoss IhakaMAPpoly (v. 0.3.3) is an R package to construct genetic maps in diploids and autopolyploids with even ploidy levels. In its current version, MAPpoly can handle ploidy levels up to 8 when using hidden Markov models (HMM) and up to 12 when using the two-point simplification. When dealing with large numbers of markers (> 10,000), we strongly recommend using high-performance computing (HPC).
Funding
A genetics-based data analysis system for breeders in polyploid breeding programs
National Institute of Food and Agriculture
Find out more...History
Data contact name
Mollinari, MarceloData contact email
mmollin@ncsu.eduPublisher
Ag Data CommonsTemporal Extent Start Date
2018-01-01Theme
- Non-geospatial
ISO Topic Category
- biota
National Agricultural Library Thesaurus terms
diploidy; autopolyploidy; computer software; Markov chainOMB Bureau Code
- 005:20 - National Institute of Food and Agriculture
Pending citation
- No
Public Access Level
- Public