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Data and Code from: Environment, plant genetics, and their interaction shape important aspects of sunflower rhizosphere microbial communities [GitHub repository]

online resource
posted on 2024-09-27, 14:49 authored by Clifton Bueno de MesquitaClifton Bueno de Mesquita, Corinne WalshCorinne Walsh, Ziv Attia, Brady Koehler, Zachary Tarble, David Van Tassel, Nolan C. Kane, Brent S. Hulke
<h3>GitHub Repository</h3><p dir="ltr"> - Description: Contains data, processing and analysis code, initial exploratory figures, final publication figures, and final publication tables.</p><p dir="ltr"> - Link: https://github.com/cliffbueno/Sunflower_AEM</p><p dir="ltr"> - Note: A release of this repository has been archived on Zenodo with a stable DOI: https://zenodo.org/doi/10.5281/zenodo.12193724</p>

Funding

USDA-ARS: 5442-21220-024

USDA-ARS: 3060-21220-034

USDA-ARS: 3060-21000-039

USDA-ARS: 3060-21000-043

USDA-ARS: 3060-21000-047

SCLEROTINIA INITIATIVE

Agricultural Research Service

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History

Related Materials

  1. 1.
    DOI - Is identical to https://doi.org/10.5281/zenodo.12193724
  2. 2.
    URL - Has metadata Geodata ISO 19139 metadata

Data contact name

Smart, Brian, C.

Data contact email

brian.smart@ndsu.edu

Publisher

GitHub

Intended use

This data is intended for researchers studying plant-microbe interactions, rhizosphere ecology, and the effects of genotype and environment on microbial communities. It can be used for comparative analyses, meta-analyses, or as a reference for similar studies on other plant species or environments.

Use limitations

While the data is provided under CC0, users should cite the original paper when using this data in their research.

Temporal Extent Start Date

2020-05-15

Temporal Extent End Date

2020-08-31

Theme

  • Geospatial

Geographic Coverage

Geographic location - description

Velva, ND Mandan, ND Mentor, MN Grandin, ND Carrington, ND Casselton, ND Brookings, SD The Land Institute, KS Lindsborg, KS Ralls, TX Kirkmeyer (Brighton, CO) Burlington, CO McLaughlin, SD Pierre, SD -100.9931027,48.1540877 -100.9335313,46.776022 -96.157576,47.6910183 -97.0468172,47.2365859 -99.1250821,47.518617 -97.2274694,46.8835384 -96.7890523,44.3686259 -97.5675113,38.7683104 -97.7607953,38.5372324 -101.3970328,33.6812646 -104.6952639,40.0023844 -102.271667,39.186944 -100.913158,45.772105 -100.107642,44.53828

ISO Topic Category

  • environment
  • farming
  • geoscientificInformation
  • location
  • biota

National Agricultural Library Thesaurus terms

plant genetics; Helianthus annuus; rhizosphere; microbial communities; microbiome; Sclerotinia; Great Plains region; fungi; climate

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 301

Pending citation

  • Yes

Related material without URL

Bueno de Mesquita, C. P., Walsh, C. M., Attia, Z., Koehler, B. D., Tarble, Z. J., Van Tassel, D. L., Kane, N. C., & Hulke, B. S. (in press). Environment, plant genetics, and their interaction shape important aspects of sunflower rhizosphere microbial communities. Applied and Environmental Microbiology.

Public Access Level

  • Public

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    Categories

    Keywords

    rhizosphere microbiomessunflowersHelianthus annuus L.Sclerotiniaplant microbe interactionsplant geneticsgenotype environment interactionssoil microbial community16s rDNA amplicon sequencingITS gene sequencingGreat Plainsarchaeabacteriafungi communitiesmicrobial diversitiescommunity composition analysisGeographic Variationsclimate effects

    Licence

    CC0

    Exports

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