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oyster metagenome Raw sequence reads

dataset
posted on 2024-01-26, 23:16 authored by University of New Hampshire
Oysters naturally harbor the human gastric pathogen Vibrio parahaemolyticus, but the nature of this association is unknown. Because microbial interactions could influence the accumulation of V. parahaemolyticus in oysters, we investigated the composition of the microbiome in water and oysters at two ecologically unique sites, Nannie Island and Oyster River, in the Great Bay Estuary, New Hampshire using 16s rRNA profiling. We then evaluated correlations between bacteria inhabiting the oyster with V. parahaemolyticus abundance quantified using a most probable number (MPN) analysis.

Funding

National Institutes of Health, 1R03AI081102-01

National Science Foundation, IIA-1330641

U.S. Department of Agriculture, NH00574

U.S. Department of Agriculture, NH00609

U.S. Department of Agriculture, NH00625

National Oceanic and Atmospheric Administration, R/CE-137

National Oceanic and Atmospheric Administration, R/HCE-3

National Oceanic and Atmospheric Administration, R/SSS-2

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2017-12-08

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA421708

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