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oyster metagenome Raw sequence reads
dataset
posted on 2024-06-11, 05:47 authored by University of New HampshireOysters naturally harbor the human gastric pathogen Vibrio parahaemolyticus, but the nature of this association is unknown. Because microbial interactions could influence the accumulation of V. parahaemolyticus in oysters, we investigated the composition of the microbiome in water and oysters at two ecologically unique sites, Nannie Island and Oyster River, in the Great Bay Estuary, New Hampshire using 16s rRNA profiling. We then evaluated correlations between bacteria inhabiting the oyster with V. parahaemolyticus abundance quantified using a most probable number (MPN) analysis.
Funding
National Institutes of Health, 1R03AI081102-01
National Science Foundation, IIA-1330641
U.S. Department of Agriculture, NH00574
U.S. Department of Agriculture, NH00609
U.S. Department of Agriculture, NH00625
National Oceanic and Atmospheric Administration, R/CE-137
National Oceanic and Atmospheric Administration, R/HCE-3
National Oceanic and Atmospheric Administration, R/SSS-2
History
Data contact name
BioProject Curation StaffData contact email
bioprojecthelp@ncbi.nlm.nih.govPublisher
National Center for Biotechnology InformationTemporal Extent Start Date
2017-12-08Theme
- Non-geospatial
ISO Topic Category
- biota
National Agricultural Library Thesaurus terms
sequence analysisPending citation
- No
Public Access Level
- Public