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'Nonpareil' almond genome and methylome sequencing

dataset
posted on 2024-01-27, 05:11 authored by Ohio State University
Breeding and improvement efforts worldwide have led to the development of key, productive cultivars, including Nonpareil, which is the most commonly grown almond cultivar. Thus far, genomic resources for this species have been limited, and the whole genome assembly for Nonpareil is not currently available despite its economic importance and use in almond breeding. We generated a 615.89X coverage sequence using Illumina, PacBio, and optical mapping technologies. Gene prediction revealed 27,487 genes using MinION Oxford nanopore and Illumina RNA sequencing, and genome annotation found that 68% of predicted models are associated with at least one biological function. In addition to the genome sequence and annotation, this report also provides the complete methylome of several key almond tissues, including leaf, flower, endocarp, mesocarp, fruit skin, and seed coat.

Funding

U.S. Department of Agriculture, 2019-67011-29558

Almond Board of California, HORT35

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2021-12-26

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA769745

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