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'HoneySweet' Plum leaf small RNAs

dataset
posted on 2024-09-29, 06:38 authored by USDA-Agricultural Research Service
The question was if there are specific small RNAs that are responsible for the high resistance to Plum Pox Virus, of the transgenic plum, 'HoneySweet', which has the coat protein gene for PPV. 'HoneySweet' plum trees in the field were exposed to Plum Pox Virus Rec strain through a graft of infected 'Emma Leppermann'. After five years the graft was removed from four of the trees. Small RNAs were sequenced from unexposed 'HoneySweet' trees, 'HoneySweet' trees that contained the graft as well as those that the infected graft had been removed. The goal was to determine the population of small RNAs related to Plum Pox Virus in 'HoneySweet' reative to the infected 'Emma Leppermann'. Samples were taken from leaf tissue above and below the graft as well as the graft, to determine if movement of the small RNAs took place.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2021-06-28

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA741990

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA741990 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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