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Whole genome assembly of Ovis Aries Rambouillet breed

dataset

posted on 2024-09-29, 05:42 authored by Baylor College of Medicine Human Genome Sequencing Center

Sequence and assembly of the genome of a Rambouille breed ewe, OAR_USU_Benz2616. The data includes Pacific Biosciences long-read data for de novo contig assembly, Illumina short-read data for base-quality polishing, and Hi-C Illumina data for genomicscaffolding. In addition, 100 tissues have been collected from the same animal for FAANG (Functional Annotation of Animal Genomes) assays including RNA sequencing using both short and long read technologies.

Funding

USDA: 2013-67015-21372/sub #130428-00001237

USDA: 2017-67016-26301/sub #BGK418-SB-002

USDA: 2013-67015-21228

USDA: 2013-67015-21228, 2013-67015-21372, and 2017-67016-26301

ISGC: Sheep Genomics_2510

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2017-09-26

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

Biological Sciences; biotechnology; genetics

Pending citation

Public Access Level

Public

Accession Number

PRJNA412242

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA412242 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Biological Sciences biotechnology genetics

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