Ag Data Commons
Browse

Whole Genome Resequencing in North American Atlantic salmon

dataset
posted on 2024-11-23, 22:00 authored by USDA/ARS
We performed high coverage whole genome re-sequencing of 80 North American Atlantic salmon individuals from three aquaculture stocks that are propagated in the USDA-ARS National Cold Water Marine Aquaculture Center (NCWMAC). The sequence data was used for SNP discovery and the resulting SNP database provides an important resource for a new high density SNP array design and other SNP genotyping platforms used in various genetic and genomics studies of North American Atlantic salmon.

Funding

USDA-ARS: 8082-31000-012-00D

USDA-ARS: 8030-31000-004-00D

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2019-08-08

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA559280

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA559280 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

Usage metrics

    Categories

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC