- No file added yet -

Wastewater 16S rRNA sequencing

Name: Wastewater 16S rRNA sequencing
Published: 2024-09-29T07:16:28+00:00
License: https://rightsstatements.org/vocab/UND/1.0/
Keywords: raw sequence reads

dataset

posted on 2024-09-29, 07:16 authored by Oregon State University

The objective of this study was to determine the impact of season and geography on antibiotic resistance and the microbiome in Oregon wastewater. Samples were collected in summer and winter from 17 wastewater treatment utilities in Oregon from wastewater influent, secondary effluent (post-biological treatment), final effluent, and biosolids. The microbiome was determined from 16S rRNA amplicon sequencing, and antibiotics and antibiotic resistance genes were determined using LC-MS/MS and qPCR, respectively.

Funding

USDA: 2018-67017-27631

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2023-11-21

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA1043653

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA1043653 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

Usage metrics

Keywords

raw sequence reads

Licence

Exports

RefWorks

BibTeX

Ref. manager

Endnote

DataCite

NLM