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WGS sequencing, assembly, and annotation

dataset
posted on 2024-01-27, 04:53 authored by DOE Joint Genome Institute, USDA - Agricultural Research Service, Plant Research International, Stanford Human Genome Center (SHGC)
The Department of Energy (DOE) Joint Genome Institute (JGI), in collaboration with the USDA - Agricultural Research Service and Plant Research International, sequenced the Mycosphaerella graminicola strain IPO323 genome at 8.9X coverage using whole genome shotgun (WGS) sequencing. The genome was annotated using both automated and manual methods. The M. graminicola genome is being finished at the Stanford Human Genome Center (SHGC). The M. graminicola isolate IPO323 is a Dutch field strain that was isolated in 1984 from the wheat cultivar Arminda.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2011-06-21

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA19047

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