- No file added yet -

WGS sequencing, assembly, and annotation

dataset

posted on 2024-09-29, 05:11 authored by DOE Joint Genome Institute, USDA - Agricultural Research Service, Plant Research International, Stanford Human Genome Center (SHGC)

The Department of Energy (DOE) Joint Genome Institute (JGI), in collaboration with the USDA - Agricultural Research Service and Plant Research International, sequenced the Mycosphaerella graminicola strain IPO323 genome at 8.9X coverage using whole genome shotgun (WGS) sequencing. The genome was annotated using both automated and manual methods. The M. graminicola genome is being finished at the Stanford Human Genome Center (SHGC). The M. graminicola isolate IPO323 is a Dutch field strain that was isolated in 1984 from the wheat cultivar Arminda.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2011-06-22

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

Public Access Level

Public

Accession Number

PRJNA19047

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA19047 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

Usage metrics

Keywords

Zymoseptoria tritici IPO323 IPO323 eEukaryotes

Licence

Exports

RefWorks

BibTeX

Ref. manager

Endnote

DataCite

NLM