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Vitis rotundifolia cultivar:Noble Genome sequencing

dataset

posted on 2024-06-11, 06:41 authored by Florida Agricultural & Mechanical University

To establish the basis for the study of Muscadinia species, we generated chromosome-level whole-genome sequences of V. rotundifolia. A total of 393.8 Mb of 20 haploid chromosome sequences was assembled, and a total of 26,394 coding genes were identified from the sequences. The comparative analysis with the genome sequence of V. vinifera revealed smaller size of V. rotundifolia genome due to the differential activity of LTR-retrotransposons.

Funding

National Institute of Food and Agriculture, 1018161

National Institute of Food and Agriculture, 1019285

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2022-03-12

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome

Pending citation

Public Access Level

Public

Accession Number

PRJNA738474

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA738474 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Vitis rotundifolia eEukaryotes genome sequencing

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