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Trichogramma pretiosum genome annotations v0.5.3

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posted on 2024-02-13, 13:04 authored by Amelia R.I. Lindsey, Yogeshwar D. Kelkar, Xin Wu, Dan Sun, Ellen O. Martinson, Zhichao Yan, Paul F. Rugman-Jones, Daniel S.T. Hughes, Shwetha C. Murali, Jiaxin Qu, Shannon Dugan-Perez, Sandra L. Lee, Hsu Chao, Huyen Dinh, Yi Han, Harshavardhan Doddapaneni, Kim C. Worley, Donna M. Muzny, Gongyin Ye, Richard A. Gibbs, Stephen Richards, Soojin V. Yi, Richard Stouthamer, John H. Werren

This dataset presents the Trichogramma pretiosum gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Trichogramma pretiosum genome assembly 1.0. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use.


Resources in this dataset:

  • Resource Title: Trichogramma pretiosum genome annotations v0.5.3.

    File Name: tripre_BCM_version_0.5.3.tar.gz

    Resource Description: The attached tar.gz archive (tripre_BCM_version_0.5.3.tar.gz) contains the following files:

    TPRE.CDS.fna. CDS sequences of the genome annotations v0.5.3.

    TPRE.faa. Amino acid sequences of the genome annotations v0.5.3.

    TPRE.fna. cDNA sequences of the genome annotations v0.5.3.

    TPRE.Models.gff3. Gff3 of all gene predictions of the genome annotations v0.5.3.

    TPRE.Analysis.gff3 Gff3 of all evidence contributing to the genome annotations v0.5.3.

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Lindsey, Amelia

Data contact email

alind005@ucr.edu

Publisher

Ag Data Commons

Theme

  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; genes; genome assembly; Trichogramma pretiosum

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Lindsey, Amelia R.I.; Kelkar, Yogeshwar D.; Wu, Xin; Sun, Dan; Martinson, Ellen O.; Yan, Zhichao; Rugman-Jones, Paul F.; Hughes, Daniel S.T.; Murali, Shwetha C.; Qu, Jiaxin; Dugan-Perez, Shannon; Lee, Sandra L.; Chao, Hsu; Dinh, Huyen; Han, Yi; Doddapaneni, Harshavardhan; Worley, Kim C.; Muzny, Donna M.; Ye, Gongyin; Gibbs, Richard A.; Richards, Stephen; Yi, Soojin V.; Stouthamer, Richard; Werren, John H. (2018). Trichogramma pretiosum genome annotations v0.5.3. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1440022

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    Categories

    Keywords

    genome annotationTrichogramma pretiosum

    Licence

    CC BY-SA 4.0

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