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Transcriptomic study to understand scab resistance in pecan

Name: Transcriptomic study to understand scab resistance in pecan
Published: 2024-09-29T07:16:41+00:00
License: https://rightsstatements.org/vocab/UND/1.0/
Keywords: raw sequence reads

dataset

posted on 2024-09-29, 07:16 authored by The University of Georgia, HudsonAlpha Genome Sequencing Center

Pecan scab caused by a fungus, Venturia effusa, is the most damaging pecan disease in the southeastern United States. To understand molecular mechanisms of scab resistance in pecan, an RNA-sequencing-based comparative transcriptomic study of the pecan cultivar 'Desirable' was carried out after inoculating leaf samples with two scab isolates, which differ in their level of pathogenicity. Samples were collected and analyzed at three different time points (24, 48, and 96 hours post-inoculation with the fungus).

Funding

USDA-NIFA: 2016-51181-25408

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2024-01-19

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA1066957

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA1066957 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

raw sequence reads

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