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Transcriptome sequencing of axillary buds of switchgrass Pvtb1 mutant and WT plant.

dataset
posted on 2024-11-23, 22:06 authored by Iowa State University
It was shown in the expression database that Pvtb1 genes in switchgrass expressed highly in axillary buds (Panicum virgatum v1.0, DOE-JGI, http://phytozome.jgi.doe.gov/). Thus, we extracted RNAs from axillary buds of tillers. The mutant 52-1 with highly enhanced tiller production and the WT plant (WT-1) generated from the same callus line from which the mutant 52-1 was obtained were chosen for mRNA-seq. RNA-seq analysis revealed a complex regulatory network potentially regulating tillering in switchgrass and provided some clues to the pathways of Pvtb1 genes.

Funding

USDA: 2013-33522-21091

ISU

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2020-08-30

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA660286

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA660286 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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