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Theobroma cacao cultivar:ICS1, CCN51, and Pound7 Raw sequence reads

dataset

posted on 2024-06-11, 07:15 authored by USDA/ARS

Black pod rot, caused by Phytophthora palmivora, is one of the most devastating diseases of Theobroma cacao L. (cacao) leading to huge losses for farmers and limiting supplies to the chocolate industry. To understand resistance responses of cacao leaves to Phytophthora palmivora, young red leaves of cacao clones ICS1, CCN51, and Pound7 were inoculated with zoospores of Phytophthora palmivora and monitored for disease symptom development out to 48 hours. RNA-Seq was carried out on samples 24 h post Phytophthora palmivora inoculation.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2021-12-03

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA785999

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA785999 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Theobroma cacao eEukaryotes raw sequence reads

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