The Porcine Translational Research Database
The data in the Porcine Translational Research Database is supported by >5800 references, and contains 65 data fields for each entry, including >9700 full length (5′ and 3′) unambiguous pig sequences, >2400 real time PCR assays and reactivity information on >1700 antibodies. It also contains gene and/or protein expression data for >2200 genes and identifies and corrects errors (gene duplications artifacts, mis-assemblies, mis-annotations, and incorrect species assignments) for >2,000 porcine genes. This database is the largest manually curated database for any single veterinary species and is unique among porcine gene databases in regard to linking gene expression to gene function, identifying related gene pathways, and connecting data with other porcine gene database.
Resources in this dataset:
Resource Title: The Porcine Translational Research Database.
File Name: Web Page, url: https://www.ars.usda.gov/northeast-area/beltsville-md/beltsville-human-nutrition-research-center/diet-genomics-and-immunology-laboratory/docs/dgil-porcine-translational-research-database/
Funding
USDA-ARS: 1235-51000-055-00D
History
Data contact name
Dawson, HarryData contact email
Harry.Dawson@ARS.USDA.GOVPublisher
USDA Agricultural Research ServiceIntended use
To provide a centralized, manually-curated source of genomic and proteomic information for swine in biomedical research.Use limitations
The database provides data for approximately 1/2 of the genome. Furthermore the database, as currently formatted, only provides the sequence for the longest RNA transcript or protein.Temporal Extent Start Date
2004-01-01Theme
- Not specified
Geographic location - description
Beltsville Human Nutrition Research Center, 10300 Baltimore, Ave. Beltsville, MDISO Topic Category
- biota
National Agricultural Library Thesaurus terms
databases; genes; humans; swine; rodents; gene ontology; quantitative polymerase chain reaction; polymerase chain reaction; Abutilon theophrasti; protein synthesis; genetic databases; gene expression; biomedical research; proteomics; animal models; surveys; mice; cattle; rats; proteins; genetic markers; solutes; adenosine triphosphate; microRNA; genomicsOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 107
- 103
Pending citation
- No
Public Access Level
- Public