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events_6000000034.json (288.54 kB)
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TERRA-REF Season 6 phenotypes and agronomic metadata in BrAPI format

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dataset
posted on 2023-11-30, 10:07 authored by David LebauerDavid Lebauer

This data represents a small subset of the TERRA-REF release available on Dryad (LeBauer et al 2020). In addition to harvested biomass for each cultivar, it includes plot location, planting date, harvest date, fertilizer application, genotype / accession names and metadata, and additional agronomic management metadata for a population of Sorghum bicolor evaluated over two growing seasons.

One way in which the data can be accessed is through a BrAPI-compliant endpoint at terraref.org/brapi. This dataset is a snapshot of the TERRA-REF BrAPI endpoint contents, representing the minimum data and metadata required to run a crop model. These BrAPI-compliant json files were downloaded from terraref.org/brapi. BrAPI is a data format widely used by plant breeders, and is described in Selby et al. 2019, https://doi.org/10.1093/bioinformatics/btz190


Resources in this dataset:

  • Resource Title: Season 6 Agronomic Management in BrAPI format.

    File Name: events_6000000034.json


  • Resource Title: Season 6 Germplasm in BrAPI format.

    File Name: germplasm_6000000034.json


  • Resource Title: Season 6 Phenotypes in BrAPI format.

    File Name: observations_6000000034.json


  • Resource Title: Season 6 Study Metadata in BrAPI format.

    File Name: study_6000000034.json

Funding

Advanced Research Projects Agency - Energy, DE-AR0000598

History

Data contact name

LeBauer, David

Data contact email

dlebauer@arizona.edu

Publisher

Ag Data Commons

Intended use

This data is intended for use for crop modeling. It is the first attempt to convert BrAPI-compliant data into the standard format used by crop models in the AgMIP project.

Use limitations

These data are in the public domain. These are made available here for inclusion in the Agriultural Research Data Network, in a format defined by the AgMIP Crop Experiment format. Please cite LeBauer et al 2020 doi:10.5061/dryad.4b8gtht99

Temporal Extent Start Date

2017-04-13

Temporal Extent End Date

2018-08-02

Frequency

  • irregular

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Polygon","coordinates":[[[-111.9747967,33.0764953],[-111.9747966,33.0745228],[-111.9750963,33.074485715],[-111.9750964,33.0764584],[-111.9747967,33.0764953]]]},"type":"Feature","properties":{}}]}

Geographic location - description

Agricultural research field under the field scanner at the University of Arizona Maricopa Agricultural Center in Maricopa, Arizona

ISO Topic Category

  • biota

Ag Data Commons Group

  • ARDN

National Agricultural Library Thesaurus terms

phenotype; metadata; scanners; Arizona; biomass; cultivars; planting date; harvest date; fertilizer application; genotype; Sorghum bicolor; growing season; data collection; crop models; plant breeders; digital images; genomics; meteorological data; phenomics; color; field methods; algorithms; databases; plant breeding; durum wheat; winter; artificial intelligence; image analysis; engineering; agronomy

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

LeBauer et al 2020 "Data From: TERRA REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors", Dryad, 10.5061/dryad.4b8gtht99

Usage metrics

    Categories

    Keywords

    Field-based high-throughput phenotypingbiomass yieldARDN-devEARTH SCIENCE > AGRICULTURE > AGRICULTURAL PLANT SCIENCE > PLANT BREEDING AND GENETICSBrAPI

    Licence

    CC0

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