TERRA-REF Season 4 and 6 Sorghum phenotypes and agronomic metadata in BrAPI format: ARDN Products

dataset

posted on 2023-11-30, 11:30 authored by David LebauerDavid Lebauer

ARDN (Agricultural Research Data Network) annotations for "TERRA-REF Season 4 and 6 Sorghum phenotypes and agronomic metadata in BrAPI format". The ARDN project (<a href="https://usda.figshare.com/ARDN">https://usda.figshare.com/ARDN</a>) is a network of datasets harmonized and aggregated using the ICASA vocabulary, as recommended by USDA NAL (<a href="https://data.nal.usda.gov/data-dictionary-examples">https://data.nal.usda.gov/data-dictionary-examples</a>) and described in detail here: <a href="www.tinyurl.com/icasa-mvl">www.tinyurl.com/icasa-mvl</a> ARDN provides dataset annotations which facilitate interoperability. For information on how to use ARDN annotations and other data products, see <a href="https://agmip.github.io/ARDN/ARDN_how.html">https://agmip.github.io/ARDN/ARDN_how.html</a>. This data represents a small subset of the TERRA-REF release available on Dryad (LeBauer et al 2020, <a href="https://doi.org/10.5061/dryad.4b8gtht99">https://doi.org/10.5061/dryad.4b8gtht99</a>). In addition to harvested biomass for each cultivar, it includes plot location, planting date, harvest date, fertilizer application, genotype / accession names and metadata, and additional agronomic management metadata for a population of Sorghum bicolor evaluated over two growing seasons. Please refer to the parent dataset for additional information on experimental details. <div> Resources in this dataset:</div> <ul><li>Resource Title: ARDN SC2 for TERRA-REF Season 4 and 6 data. File Name: sc2.jsonResource Description: ARDN sidecar 2 file which allows dataset to be automatically interpreted and translated to end user formats.Resource Software Recommended: AgMIP / ARDN Data Factory,url: <a href="https://data.agmip.org/ardn/tools/data_factory" target="_blank">https://data.agmip.org/ardn/tools/data_factory</a> </li></ul>

Funding

Advanced Research Projects Agency - Energy, DE-AR0000598

History

Related Materials

1.
DOI - Is documented by LeBauer, David et al. (2020), Data From: TERRA-REF, An open reference data set from high resolution genomics, phenomics, and imaging sensors, Dryad, Dataset, [https://doi.org/10.5061/dryad.4b8gtht99](https://doi.org/10.5061/dryad.4b8gtht99)
2.
DOI - Is documented by Burnette, M., Kooper, R., Maloney, J. D., Rohde, G. S., Terstriep, J. A., Willis, C., Fahlgren, N., Mockler, T., Newcomb, M., Sagan, V., Andrade-Sanchez, P., Shakoor, N., Sidike, P., Ward, R., & LeBauer, D. (2018). TERRA-REF Data Processing Infrastructure. Proceedings of the Practice and Experience on Advanced Research Computing. https://doi.org/10.1145/3219104.3219152
3.
URL - Is supplemented by Data From: TERRA REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors
4.
URL - Is supplemented by TERRA-REF Season 4 and 6 Sorghum phenotypes and agronomic metadata in BrAPI format
5.
URL - Is supplemented by ARDN website
6.
URL - Cites Data From: TERRA REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors
7.
URL - Cites TERRA-REF Season 4 and 6 Sorghum phenotypes and agronomic metadata in BrAPI format
8.
URL - Is part of TERRA-REF Season 4 and 6 Sorghum phenotypes and agronomic metadata in BrAPI format
9.
URL - Is compiled by Ag Data Commons ARDN project page

Data contact name

LeBauer, David

Data contact email

dlebauer@arizona.edu

Publisher

Ag Data Commons

Intended use

ARDN network of interoperable data. See https://agmip.github.io/ARDN/ and https://agmip.github.io/ARDN/ARDN_how.html. This data is intended for use for crop modeling. It is the first attempt to convert BrAPI-compliant data into the standard format used by crop models in the AgMIP project.

Use limitations

These data are in the public domain. These are made available here for inclusion in the Agricultural Research Data Network, in a format defined by the AgMIP Crop Experiment format. Please cite LeBauer et al 2020 doi:10.5061/dryad.4b8gtht99

Temporal Extent Start Date

2018-04-20

Temporal Extent End Date

2018-08-02

Frequency

irregular

Theme

Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Polygon","coordinates":[[[-111.9747967,33.0764953],[-111.9747966,33.0745228],[-111.9750963,33.074485715],[-111.9750964,33.0764584],[-111.9747967,33.0764953]]]},"type":"Feature","properties":{}}]}

Geographic location - description

Agricultural research field under the field scanner at the University of Arizona Maricopa Agricultural Center in Maricopa, Arizona

ISO Topic Category

biota

Ag Data Commons Group

ARDN

National Agricultural Library Thesaurus terms

phenotype; metadata; scanners; Arizona; biomass; cultivars; planting date; harvest date; fertilizer application; genotype; Sorghum bicolor; growing season; data collection; crop models; plant breeders; digital images; genomics; meteorological data; phenomics; color; field methods; algorithms; databases; plant breeding; durum wheat; winter; artificial intelligence; image analysis; engineering; agronomy

Pending citation

Public Access Level

Public

Preferred dataset citation

LeBauer et al 2020 "Data From: TERRA REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors", Dryad, 10.5061/dryad.4b8gtht99

Usage metrics

Keywords

Field-based high-throughput phenotyping biomass yield ARDN-dev EARTH SCIENCE > AGRICULTURE > AGRICULTURAL PLANT SCIENCE > PLANT BREEDING AND GENETICS BrAPI

Licence

CC0