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Sus scrofa Transcriptome IsoSeq

dataset

posted on 2024-06-11, 05:37 authored by Iowa State University, Meat Animal Research Center, ARS, USDA, Clay Center, NE, USA

To finely annotate a newly assembled PacBio long-read based genome, multiple tissues from the same single cross-bred domestic pigs were sequenced by PacBio IsoSeq and Illumina RNA-seq. The "full-length, non-chimeric" IsoSeq reads were error corrected with the cleaned, merged and digitally normalized RNA-seq reads by combining the SMRT Analysis software with Proovread.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2016-10-28

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

transcriptome; gene expression

Pending citation

Public Access Level

Public

Accession Number

PRJNA351265

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA351265 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Sus scrofa eEukaryotes transcriptome

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