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Soil microbiome transfer method comparison

dataset
posted on 2024-01-26, 23:10 authored by Cornell University
In this study we compare the microbial communities that are transferred from a natural soil to a commercial peat moss potting mix microcosm using common soil microbiome transplant methods: direct soil transfers of different concentrations (0.1, 1, and 5% v/v) and a soil wash (microbial fraction equivalent to the 5% v/v direct soil transfer. These methods are commonly used in soil microbiome transplant experiments. We analyzed the microbial communities using 16S rRNA gene and fungal ITS amplicon sequencing after 3 weeks in incubation in the potting mix. The initial community in the inoculant soil and the community in the soil wash extract were also characterized.

Funding

U.S. Department of Agriculture, 2016-67013-24414

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2017-03-06

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA378299

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