Ag Data Commons
Browse

File(s) stored somewhere else

Please note: Linked content is NOT stored on Ag Data Commons and we can't guarantee its availability, quality, security or accept any liability.

Shotgun metagenomic (gDNA) and metatranscriptomics (total RNA) analysis to profile the microbiome and virome of Royal Jelly

dataset
posted on 2024-06-11, 07:16 authored by University of Florida
The Microbiome and Virome of Royal Jelly (RJ) project involved shotgun meta-genomic sequencing of DNA and meta-transcriptomic sequencing of total RNA, via reverse transcriptase of complementary dsDNA, of twelve RJ samples, commercially available and from hives at the University of Florida, Honey Bee Research and Extension Laboratory, Gainesville, FL, USA. RJ is a substance produced by the hypopharyngeal gland of nurse worker honey bees (Apis mellifera L.) and a main dietary component for in vitro and hive rearing of honey bee larvae. The data allowed inferring for the first time a comprehensive assessment of the microbiome and virome present in Royal Jelly, from unicellular Bacteria to Plants, Animals, Fungi, Virus (RNA and DNA viruses), and other organisms. In addition, the project developed new extraction and sequencing protocols for this biological material.

Funding

U.S. Department of Agriculture, AP22PPQS&T00C189

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2023-01-05

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA918702

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA918702 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

Usage metrics

    Categories

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC