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Shewanella sp. Iso12 Genome sequencing and assembly

dataset
posted on 2024-06-11, 06:20 authored by UMBC
A bacterial strain isolated from the intestine of Fundulus heteroclitus (a species of killifish commonly known as the mummichog) was shown to possess antimicrobial activity towards several Vibrio spp. fish and coral pathogens. Sequence analysis indicated the strain, named ISO12, is a Shewanella species and possesses marinocine-encoding genes, a broad-spectrum antimicrobial protein, which likely plays a role in the isolate's ability to inhibit pathogen growth. As such, ISO12 has been studied for its potential as a probiotic in marine aquaculture and its genome sequence will assist in identifying other genes and processes relevant to this activity.

Funding

U.S. Department of Agriculture, Z5659004

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2020-04-03

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA615879

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA615879 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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