Ag Data Commons
Browse

File(s) stored somewhere else

Please note: Linked content is NOT stored on Ag Data Commons and we can't guarantee its availability, quality, security or accept any liability.

Seroplacer Environmental Sample and Isolate Sequencing

dataset
posted on 2024-02-07, 00:00 authored by North Carolina State University
Test 16S sequence data for Seroplacer R package analysis. These are the FASTQ files for both the environmental samples and the Salmonella isolates. Sequencing was performed using Loop Genomics 16S amplicon sequencing pipeline. The goal of this study is to analyze if it is possible to predict bacterial serovars using only 16S amplicon sequencing data. We used these test isolates and environmental samples in order to evaluate the performance of our computational algorithm.

Funding

National Institute of Food and Agriculture, 2019-67021-29927

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2023-06-27

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA988246

Usage metrics

    Categories

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC