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Seroplacer Environmental Sample and Isolate Sequencing

dataset
posted on 2024-11-23, 22:25 authored by North Carolina State University
Test 16S sequence data for Seroplacer R package analysis. These are the FASTQ files for both the environmental samples and the Salmonella isolates. Sequencing was performed using Loop Genomics 16S amplicon sequencing pipeline. The goal of this study is to analyze if it is possible to predict bacterial serovars using only 16S amplicon sequencing data. We used these test isolates and environmental samples in order to evaluate the performance of our computational algorithm.

Funding

USDA-NIFA: 2019-67021-29927

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2023-06-27

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA988246

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA988246 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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    Keywords

    raw sequence reads

    Licence

    Copyright Undetermined

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