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Root exudates protect rhizosphere Pseudomonas from water stress

dataset
posted on 2025-06-25, 02:02 authored by United States Department of Agriculture
This study investigates the molecular mechanisms by which Pseudomonas synxantha 2-79, a rhizobacterium associated with wheat grown in arid regions, adapts to water stress through its interaction with root exudates. We found that water-stressed wheat root exudates contain elevated levels of choline and glycine betaine, which serve as osmoprotectants for 2-79. Exposure to these exudates upregulated genes involved in the uptake and catabolism of these quaternary ammonium compounds (QACs), enhancing the bacteriums ability to cope with osmotic stress. Mutants lacking QAC transporters displayed reduced growth under osmotic stress, highlighting the importance of these pathways in rhizosphere competence. Furthermore, the study revealed that 2-79 also produces biofilms containing protective exopolysaccharides such as alginate and Psl, which aid in stress resilience. Overall, our findings provide insights into how root exudates shape bacterial adaptation to the water-stressed rhizosphere and highlight the role of QAC metabolism and biofilm formation in microbial survival and plant-microbe interactions under drought conditions.

Funding

NSF: IOS-1656872

USDA-NIFA: 13729797

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2025-04-01

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA1244843

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA1244843 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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