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Rice rhizosphere metagenome Raw sequence reads

dataset
posted on 2024-09-29, 06:26 authored by USDA ARS
Rice rhizophere soil metagenome samples from two parent lines (Francis and Rondo) and nine recombinant inbred lines (RILs) resulting from a cross of the parents (FR) under continuously flooded conditions. The parents display diverging methane emissions patterns (i.e. Francis is a low CH4 emitter and Rondo is a high CH4 emitter) as well as diverging agronomic traits (e.g. Francis is low biomass and Rondo is high biomass). The goal of this study was twofold; 1) determine genotypic impact on methane emissions and methane-cycling microbial community; 2) determine if biomass trait differences arising from genotypic differences influence the plant-beneficial microbial community structure.

Funding

USDA ARS: PJ012431

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2020-09-15

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA663614

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA663614 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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