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Reads2Resistome Case Study

dataset
posted on 2024-06-11, 06:22 authored by Colorado State University, U.S. National Poultry Research Center, USDA-ARS
Case study for Reads2Resistome, a streamline high-throughput analysis pipeline for the assembly, genome annotation and resistome characterization for bacterial sequence reads. Isolated were recovered from the ceca of 2-week old broiler chickens; SH-IC-4-3A: Salmonella Heidelberg and EC-IC-4-2X: Escherichia coli. Illumina, PacBio and Oxford Nanopore MinION sequences were used to test each type of assembly available under the pipeline; short read-only, long read-only and hybrid assembly.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2020-05-18

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA633564

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA633564 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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    Categories

    Keywords

    raw sequence reads

    Licence

    Copyright Undetermined

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