Re-sequencing the rainbow trout doubled haploid Swanson line for generating a new reference genome assembly

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posted on 2024-11-23, 21:46 authored by USDA/ARS

In an effort to improve the rainbow trout reference genome sequence, we have re-sequenced the doubled haploid Swanson line using longer Illumina technology reads. Overall we generated over 510 million 260nt paired-end whole genome shotgun reads, and 1 billion 160nt mate-pair reads from four fragment-size libraries (800bp - 15Kb).

Funding

USDA-ARS: 8082-31000-012

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2017-05-31

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

Public Access Level

Public

Accession Number

PRJNA335610

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA335610 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Oncorhynchus mykiss eEukaryotes raw sequence reads genome sequencing Genome sequencing and assembly eRawSequenceReads

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