.GZ

E1201_S52_L008_R1_001.fastq.gz (1.27 GB)

.GZ

E1201_S52_L008_R2_001.fastq.gz (1.46 GB)

.GZ

E1236_S53_L008_R1_001.fastq.gz (1.18 GB)

.GZ

E1236_S53_L008_R2_001.fastq.gz (1.36 GB)

.GZ

E1275_S55_L008_R1_001.fastq.gz (1.21 GB)

.GZ

E1275_S55_L008_R2_001.fastq.gz (1.4 GB)

.GZ

E1288_S56_L008_R1_001.fastq.gz (1.33 GB)

.GZ

E1288_S56_L008_R2_001.fastq.gz (1.53 GB)

.GZ

E1293_S57_L008_R1_001.fastq.gz (1.32 GB)

.GZ

E1293_S57_L008_R2_001.fastq.gz (1.5 GB)

.GZ

E1316_S58_L008_R1_001.fastq.gz (1.24 GB)

.GZ

E1316_S58_L008_R2_001.fastq.gz (1.42 GB)

.GZ

E1319_S59_L008_R1_001.fastq.gz (1.23 GB)

.GZ

E1319_S59_L008_R2_001.fastq.gz (1.42 GB)

.GZ

E1443_S69_L008_R1_001.fastq.gz (1.06 GB)

.GZ

E1445_S70_L008_R2_001.fastq.gz (1.41 GB)

.GZ

E1365_S63_L008_R1_001.fastq.gz (1.02 GB)

.GZ

E1406_S67_L008_R1_001.fastq.gz (1.16 GB)

.GZ

E1365_S63_L008_R2_001.fastq.gz (1.12 GB)

.GZ

E1404_S66_L008_R1_001.fastq.gz (1.18 GB)

1/0

34 files

Raw Sequences of 17 Aspergillus Genomes from Ethiopia

dataset

posted on 2024-02-28, 21:30 authored by Renee Arias

Raw genome sequencing data of 17 isolates of Aspergillus flavus and Aspergillus parasiticus collected from peanuts from Ethiopia. These isolates were selected as representative of the genetic diversity of Aspergillus section Flavi found colonizing peanut seeds in four peanut-farming districts of Ethiopia, these are Darolabu, Gursum, Fedis, and Babile.

Resources in this dataset:

Resource Title: E1201_R1.

File Name: E1201_S52_L008_R1_001.fastq.gz

Resource Title: E1201_R2.

File Name: E1201_S52_L008_R2_001.fastq.gz

Resource Title: E1236_R1.

File Name: E1236_S53_L008_R1_001.fastq.gz

Resource Title: E1236_R2.

File Name: E1236_S53_L008_R2_001.fastq.gz

Resource Title: E1275_R1.

File Name: E1275_S55_L008_R1_001.fastq.gz

Resource Title: E1275_R2.

File Name: E1275_S55_L008_R2_001.fastq.gz

Resource Title: E1288_R1.

File Name: E1288_S56_L008_R1_001.fastq.gz

Resource Title: E1288_R2.

File Name: E1288_S56_L008_R2_001.fastq.gz

Resource Title: E1293_R1.

File Name: E1293_S57_L008_R1_001.fastq.gz

Resource Title: E1293_R2.

File Name: E1293_S57_L008_R2_001.fastq.gz

Resource Title: E1316_R1.

File Name: E1316_S58_L008_R1_001.fastq.gz

Resource Title: E1316_R2.

File Name: E1316_S58_L008_R2_001.fastq.gz

Resource Title: E1319_R1.

File Name: E1319_S59_L008_R1_001.fastq.gz

Resource Title: E1319_R2.

File Name: E1319_S59_L008_R2_001.fastq.gz

Resource Title: E1337_R1.

File Name: E1337_S60_L008_R1_001.fastq.gz

Resource Title: E1337_R2.

File Name: E1337_S60_L008_R2_001.fastq.gz

Resource Title: E1345_R1.

File Name: E1345_S61_L008_R1_001.fastq.gz

Resource Title: E1345_R2.

File Name: E1345_S61_L008_R2_001.fastq.gz

Resource Title: E1348_R1.

File Name: E1348_S62_L008_R1_001.fastq.gz

Resource Title: E1348_R2.

File Name: E1348_S62_L008_R2_001.fastq.gz

Resource Title: E1365_R1.

File Name: E1365_S63_L008_R1_001.fastq.gz

Resource Title: E1365_R2.

File Name: E1365_S63_L008_R2_001.fastq.gz

Resource Title: E1376_R1.

File Name: E1376_S64_L008_R1_001.fastq.gz

Resource Title: E1376_R2.

File Name: E1376_S64_L008_R2_001.fastq.gz

Resource Title: E1402_R1.

File Name: E1402_S65_L008_R1_001.fastq.gz

Resource Title: E1402_R2.

File Name: E1402_S65_L008_R2_001.fastq.gz

Resource Title: E1404_R1.

File Name: E1404_S66_L008_R1_001.fastq.gz

Resource Title: E1404_R2.

File Name: E1404_S66_L008_R2_001.fastq.gz

Resource Title: E1406_R1.

File Name: E1406_S67_L008_R1_001.fastq.gz

Resource Title: E1406_R2.

File Name: E1406_S67_L008_R2_001.fastq.gz

Resource Title: E1443_R1.

File Name: E1443_S69_L008_R1_001.fastq.gz

Resource Title: E1443_R2.

File Name: E1443_S69_L008_R2_001.fastq.gz

Resource Title: E1445_R1.

File Name: E1445_S70_L008_R1_001.fastq.gz

Resource Title: E1445_R2.

File Name: E1445_S70_L008_R2_001.fastq.gz

Funding

USDA-ARS: 6044-21000-005-00D

United States Agency for International Development: Agreement 58-0210-3-0012

History

Data contact name

Arias, Renee

Data contact email

Renee.Arias@USDA.GOV

Publisher

Ag Data Commons

Intended use

The availability of the raw data sequences will allow readers to use different software for genome assembly, or verify specific regions of the assembled genomes submitted to GenBank-National Center for Biotechnology Information (NCBI). The sequencing data were generated using Illumina HiSeq 4000 Pair-End reads 150 base pairs (bp).

Use limitations

These are raw data, thus, it is recommended to trim the sequencing data for possible presence of adapters and to eliminate low quality reads before processing.

Temporal Extent Start Date

2014-01-01

Temporal Extent End Date

2014-12-31

Theme

Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Polygon","coordinates":[[[40.31828,8.57202],[40.31828,8.57202],[40.31828,8.57202],[40.31828,8.57202]]]},"type":"Feature","properties":{}},{"geometry":{"type":"Polygon","coordinates":[[[42.334301,9.2262],[42.334301,9.2262],[42.334301,9.2262],[42.334301,9.2262]]]},"type":"Feature","properties":{}},{"geometry":{"type":"Polygon","coordinates":[[[42.058239,9.13425],[42.058239,9.13425],[42.058239,9.13425],[42.058239,9.13425]]]},"type":"Feature","properties":{}},{"geometry":{"type":"Polygon","coordinates":[[[42.3969399,9.35306],[42.3969399,9.35306],[42.3969399,9.35306],[42.3969399,9.35306]]]},"type":"Feature","properties":{}},{"geometry":{"type":"Polygon","coordinates":[[[40.226440429688,8.5882633493436],[42.456665039062,9.4617050429142],[42.4072265625,9.2232119789204],[42.066650390625,9.0767838430503],[40.264892578125,8.5176463965468],[40.226440429688,8.5882633493436]]]},"type":"Feature","properties":{}}]}

Geographic location - description

Districts of Gursum, Fedis, Darolabu and Babile, Ethiopia

ISO Topic Category

biota

Ag Data Commons Group

AgBioData

National Agricultural Library Thesaurus terms

genome; Ethiopia; sequence analysis; Aspergillus flavus; Aspergillus parasiticus; peanuts; genetic variation; seeds; aflatoxins; nucleotide sequences

OMB Bureau Code

005:18 - Agricultural Research Service

OMB Program Code

005:040 - National Research

ARS National Program Number

Primary article PubAg Handle

https://pubag.nal.usda.gov/catalog/7071276

Pending citation

Public Access Level

Public

Preferred dataset citation

Arias, Renee (2020). Raw Sequences of 17 Aspergillus Genomes from Ethiopia. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1518736

Usage metrics

Keywords

NP301 NP303 Aspergillus peanut aflatoxin genome sequences tropical data.gov ARS

Licence

U.S. Public Domain

Exports

RefWorks

BibTeX

Ref. manager

Endnote

DataCite

NLM