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Random Forest Classification And Timecourse Analysis Identifies Unique Dynamics Of Microbial Content In Buccal Swab Samples

dataset
posted on 2024-01-26, 23:54 authored by USDA ARS
Comprehensive analysis of the cow microbiome, as well as host genetic influences on the establishment and colonization of the rumen microbiota, is critical for development of strategies to manipulate rumen function towards more efficient and environmentally friendly milk production. To this end, the development and validation of noninvasive methosd to sample rumen microbiota at scale is required. Here, we employed next-generation sequencing to evaluate and optimize the analysis of buccal swab samples as a proxy for the microbiota of liquid- and solid-phase samples taken from the rumen. This includes data from a time-course analysis study, as well as two other disparate sampling times.

Funding

U.S. Department of Agriculture, 2015-67015-22970

U.S. Department of Agriculture, 2019-05592

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2020-04-04

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA623113

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