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Pseudoperonospora cubensis and Pseudoperonospora humuli isolate sequences from RNA-seq

dataset
posted on 2024-06-11, 05:25 authored by Cornell University
RNA sequencing (RNA-seq) was used for single nucleotide polymorphism (SNP) identification from two economically important obligate plant pathogens, Pseudoperonospora cubensis and P. humuli. The overall purpose of this study was to collect and utilize genomic data to further investigate the genetic differentiation of these two closely related species. The characterization of genes containing SNPs differentiating these two closely related downy mildew species may contribute to the development of improved detection and diagnosis strategies and improve our understanding of host specificity pathways.

Funding

National Science Foundation, DGE- 1144153

National Institutes of Health, 1S10OD010693-01

National Institute of Food and Agriculture, 2012-51300-20006

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2015-09-25

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA297046

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA297046 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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