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Porcine macrophages: ASFV-infected vs. mock-infected

dataset
posted on 2024-09-29, 06:09 authored by PIADC, Foreign Animal Disease Research Unit, USDA-ARS
Transcriptional profiling of porcine macrophages infected with Afraican swine fever virus (ASFV) infected cells and mock infection was conducted in this experiment. Overall design: Two-condition experiment: ASFV infected vs. mock infected cells. Biological replicates: three. Macrophages were prepared from 3 pigs. Macrophages from each pig were infected and mock-infected with ASFV. The total RNA samples were prepared at six time points, 3, 6, 9, 12, 15 and 18 hours post infection. Array hybridization was based on a dye-swap design in which each array contained a Cy5 or Cy3 labeled infected and a Cy3 or Cy5 labeled mock-infected sample of the same time point, respectively.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2019-06-18

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

transcriptome; gene expression

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA549440

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA549440 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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