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Phytophthora melonis strain:CPHST BL 23 Genome sequencing and assembly

dataset
posted on 2024-11-23, 22:00 authored by Contact; Gloria Abad Z, USDA-APHIS-PPQ-S&T
The reference sequences derived from type specimens serve to label with the correct and most up-to-date species name. The Ex-type material are cultures and duplicates of the Type and deposited in additional culture collections. In order to make robust and correct molecular identification and diagnostic systems, it is crucial to have information from the Ex-type specimens for accurate comparisons. Katsura in 1976 described Phytophthora melonis to accommodate the causal agent of foot rot of cucumber in Japan. Here we report the whole-genome sequence for the Ex-type of Phytophthora melonis CPHST-BL 23 duplicate of P6870 (World Oomycetes/Phytophthora Collection) generated using 3G ultra-long sequencing via the MinION platform from Oxford Nanopore Technology. The quality filtered 1,621,287reads were assembled in contigs, total length 112 Mb.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2019-09-18

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA556690

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA556690 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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