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Phytophthora infestans Raw sequence reads

dataset

posted on 2024-06-11, 05:28 authored by Cornell University

Genotyping-by-sequencing was performed on 257 Phytophthora infestans isolates representing four United States clonal lineages (US-8, US-11, US-23, and US-24) to investigate diversity within lineages. Data are restriction-site-associated short reads which were aligned to the reference genome in order to identify single nucleotide polymorphisms which were used to study population diversity.

Funding

National Institute of Food and Agriculture, 2011-68004-30154

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2016-05-31

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA323952

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA323952 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Phytophthora infestans eEukaryotes raw sequence reads

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