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Osmia lignaria genome assembly release v1

dataset

posted on 2023-11-30, 08:47 authored by Dacotah Melicher

Genome was assembled from a single male, gDNA isolated from the flight muscle using the Gentra Puregene kit. PacBio S2 sequencing at 127x coverage, polished with NextSeq-500 Illumina reads at >150x coverage.

The project is funded by the USDA Agricultural Research Service and North Dakota State University through a Track-2 EPSCoR grant (NSF-EPSCoR-1826834).

Resources in this dataset:

Resource Title: Osmia lignaria genome assembly release v1.

File Name: OligGenome-v1.zip

Funding

Agricultural Research Service

North Dakota State University, NSF-EPSCoR-1826834

History

Data contact name

Melicher, Dacotah

Data contact email

dacotah.melicher@usda.gov

Publisher

Ag Data Commons

Intended use

Genomics, population genetics, molecular applications.

Theme

Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-111.9287109375,39.864775423313]},"type":"Feature","properties":{}}]}

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

Osmia lignaria; genome assembly; genome; flight muscles; high-throughput nucleotide sequencing; male; pollinators; solitary bees; population genetics; genomics

OMB Bureau Code

005:18 - Agricultural Research Service

OMB Program Code

005:040 - National Research

ARS National Program Number

Pending citation

Public Access Level

Public

Preferred dataset citation

Melicher, Dacotah (2020). Osmia lignaria genome assembly release v1. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1518471

Usage metrics

Keywords

de novo genome pollinators bees solitary bees native bees NP305 data.gov ARS

Licence

U.S. Public Domain

Exports

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