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Orussus abietinus Official Gene Set OGSv1.0

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posted on 2024-02-13, 13:07 authored by Jan Philip Oeyen, Daniel S.T. Hughes, Stephen Richards, Bernhard Misof, Oliver Niehuis
<p>The <i>Orussus abietinus</i> genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The <i>Orussus abietinus</i> research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The general procedure for generating this OGS is outlined here: <a href="https://github.com/NAL-i5K/I5KNAL_OGS/wiki">https://github.com/NAL-i5K/I5KNAL_OGS/wiki</a>. OGSv1.0 was generated by merging gene set OABI-V0.5.3-Models generated by the Baylor College of Medicine, and community-curated models in the Apollo software, after QC of the Apollo output. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Orussus abietinus Official Gene Set OGSv1.0.</p> <p>File Name: oruabi_OGS_v1-0.tar.gz</p><p>Resource Description: The attached tar.gz archive (fraocc_OGS_v1.0.tar.gz) contains the following files:</p> <ul> <li> <p>ORUABI_OGSv1-0_CDS.fa. CDS sequences of Orussus abietinus genome annotations OGSv1.0.</p> </li> <li> <p>ORUABI_OGSv1-0_peptide.fa. Amino acid sequences of Orussus abietinus genome annotations OGSv1.0.</p> </li> <li> <p>ORUABI_OGSv1-0_transcript.fa. Transcript sequences of Orussus abietinus genome annotations OGSv1.0.</p> </li> <li> <p>ORUABI_OGSv1-0.gff3.gz. Gff3 of all gene predictions of Orussus abietinus genome annotations OGSv1.0</p> </li> <li> <p>ORUABI_Manual2OGSv1.0_id_mapping.log. A mapping file describing ID and name updates from dataset Orussus abietinus genome annotations v0.5.3.</p> </li> <li> <p>readme_oruabi_OGSv1-0_release. This file briefly describes how the Orussus abietinus Official Gene Set OGSv1.0 was generated.</p> </li> </ul> <p></p></li></ul><p></p>

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Oeyen, Jan Philip

Data contact email

janphilipoyen@gmail.com

Publisher

Ag Data Commons

Theme

  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Orussus abietinus; genes; prediction; models

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Oeyen, Jan Philip; Hughes, Daniel S.T.; Richards, Stephen; Misof, Bernhard; Niehuis, Oliver (2018). Orussus abietinus Official Gene Set OGSv1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1459558

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