Ag Data Commons
Browse
- No file added yet -

Oncopeltus fasciatus Official Gene set v1.2

Download (20.8 MB)
Version 2 2024-02-16, 14:20
Version 1 2024-02-16, 11:25
dataset
posted on 2024-02-16, 14:20 authored by Iris M. Vargas Jentzsch, Daniel S.T. Hughes, Monica PoelchauMonica Poelchau, Hugh M. Robertson, Joshua B. Benoit, Andrew J. Rosendale, David Armisén, Elizabeth J. Duncan, Barbara M.I. Vreede, Chris G.C. Jacobs, Chloe Berger, Denielle L. Burnett, Chun-che Chang, Yen-Ta Chen, Ariel D. Chipman, Andrew Cridge, Antonin Crumière, Peter Dearden, Deniz F. Erezyilmaz, Cassandra Extavour, Markus Friedrich, Thorsten Horn, Yi-min Hsiao, Jeffery W. Jones, Tamsin E. Jones, Abderrahman Khila, Megan Leask, Mackenzie R. Lovegrove, Hsiao-ling Lu, Yong Lu, Ajay Nair, Subba R. Palli, Leslie Pick, Megan L. Porter, Peter N. Refki, Rolando Rivera Pomar, Siegfried Roth, Lena Sachs, Maria Emilia Santos, Jan Seibert, Essia Sghaier, Jayendra N. Shukla, Yuichiro Suzuki, Olivia Tidswell, Lucila Traverso, Maurijn van der Zee, Severine Viala, Stephen Richards, Kristen A. Panfilio

This dataset presents the Oncopeltus fasciatus Official Gene Set (OGS) v1.2. The OGS is an update of OGSv1.1. Manual annotations from the Apollo manual annotation tool were merged with OGSv1.1 using the NAL's prototype Merge program.


Resources in this dataset:

  • Resource Title: Oncopeltus fasciatus Official Gene set v1.2.

    File Name: oncfas_OGSv1.2.tar.gz

    Resource Description: File descriptions for the OGSv1.2 release: * .gff - gff file of official gene set * transcript.fa - transcripts of all types of RNAs * cds.fa - cds sequences of mRNA * peptide.fa - peptide sequences of mRNA * IDmapping.csv - ID mapping table between OGSv1.2 and OGSv1.1 * statistics.csv - Statistics along with merging procedure

Funding

USDA-ARS

History

Data contact name

Poelchau, Monica

Data contact email

monica.poelchau@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2020-01-01

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Polygon","coordinates":[[[-141.56248569489,8.7200549291491],[-141.56248569489,59.337676323216],[-48.749985694885,59.337676323216],[-48.749985694885,8.7200549291491],[-141.56248569489,8.7200549291491]]]},"type":"Feature","properties":{}}]}

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Oncopeltus fasciatus

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Vargas Jentzsch, Iris M.; Hughes, Daniel S.T.; Poelchau, Monica; Robertson, Hugh M.; Benoit, Joshua B.; Rosendale, Andrew J.; Armisén, David; Duncan, Elizabeth J.; Vreede, Barbara M.I.; Jacobs, Chris G.C.; Berger, Chloe; Burnett, Denielle L.; Chang, Chun-che; Chen, Yen-Ta; Chipman, Ariel D.; Cridge, Andrew; Crumière, Antonin; Dearden, Peter; Erezyilmaz, Deniz F.; Extavour, Cassandra; Friedrich, Markus; Horn, Thorsten; Hsiao, Yi-min; Jones, Jeffery W.; Jones, Tamsin E.; Khila, Abderrahman; Leask, Megan; Lovegrove, Mackenzie R.; Lu, Hsiao-ling; Lu, Yong; Nair, Ajay; Palli, Subba R.; Pick, Leslie; Porter, Megan L.; Refki, Peter N.; Rivera Pomar, Rolando; Roth, Siegfried; Sachs, Lena; Santos, Maria Emilia; Seibert, Jan; Sghaier, Essia; Shukla, Jayendra N.; Suzuki, Yuichiro; Tidswell, Olivia; Traverso, Lucila; van der Zee, Maurijn; Viala, Severine; Richards, Stephen; Panfilio, Kristen A. (2020). Oncopeltus fasciatus Official Gene set v1.2. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1518752

Usage metrics

    Categories

    Keywords

    Insectsi5kMilkweed bug

    Licence

    CC BY-SA 4.0

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC