Neodiprion lecontei Official Gene Set v1.1
This dataset presents the Neodiprion Official Gene Set (OGS) v1.1. It was generated using Maker v2.31.8, followed by CrossMap re-mapping of coordinates to genome assembly Nlec1.1 (https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2/).
This dataset is now obsolete - a new genome assembly, iyNeoleco1.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_021901455.1) has been produced by the Ag100Pest project, with annotations from NCBI's RefSeq resource.
Resources in this dataset:
Resource Title: Neodiprion lecontei Official Gene Set v1.1.
File Name: neolec_OGSv1.1.tar.gz
Resource Description: The files in this directory are derived from Neolec OGSv1.0 (not publicly released). The gff3 file was updated to assembly GCA_001263575.2 (https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2) using CrossMap v0.2.8 (http://crossmap.sourceforge.net/).
neolec_OGSv1.1.gff3: Neolec OGSv1.0, updated to GCA_001263575.2 neolec_OGSv1.1_removed.tsv: Features from Neolec OGSv1.0 that were removed in the update neolec_OGSv1.1_summary.tsv: The % of individual features from Neolec OGSv1.0 that were retained in the update Nlec_v1_transcripts_renamed_alphabetized.fasta: Transcript sequences derived from Neolec OGSv1.0 Nlec_v1_proteins_renamed_alphabetized.fasta: Protein sequences derived from Neolec OGSv1.0
Funding
USDA-ARS
History
Data contact name
Geib, ScottData contact email
scott.geib@usda.govPublisher
Ag Data CommonsTemporal Extent Start Date
2018-05-01Theme
- Not specified
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-84.5037,38.0406]},"type":"Feature","properties":{}}]}ISO Topic Category
- biota
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus terms
genomics; genes; nucleotide sequences; sequence analysis; Neodiprion leconteiOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
Pending citation
- No
Public Access Level
- Public