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Microsatellite genetic variation data for endangered Florida torreya (Torreya taxifolia Arn.)

dataset
posted on 2025-03-01, 03:06 authored by Tyler J. Dreaden, Katherine E. Smith, C. Dana Nelson, Emily E. D. Coffey, Lauren Eserman, Jason A. Smith
This data publication includes allele calls for microsatellite markers for Torreya taxifolia Arn. (Florida torreya) a critically endangered (IUCN 3.1) conifer with a very limited native range in the USA, occurring in two counties in Florida and one in Georgia where it persists in ravines along the Apalachicola River. The objectives of this work are to develop genetic markers to uniquely identify individuals, examine the structure of the in situ population, and use an ex situ germplasm resource to determine if reproduction without fertilization (apomixis) occurs. We developed a panel of microsatellite markers, sampled individuals in 2008-2010 from three natural in situ populations in the Florida Gulf Coast and found population structure at all levels tested. The markers were next applied to ex situ mothers, potential fathers, and progeny to investigate the occurrence of apomixis. Data include both in situ and ex situ amplicon lengths for the 12 microsatellite loci (base pair).
The objectives of this work are to develop genetic markers to uniquely identify individuals, examine the structure of the in situ population, and use an ex situ germplasm resource to determine if reproduction without fertilization (apomixis) occurs.
For more information about these data and this study, see Dreaden et al. (2024).

Funding

USDA-FS

History

Data contact name

Tyler Dreaden

Data contact email

tyler.j.dreaden@usda.gov

Publisher

Forest Service Research Data Archive

Use limitations

These data were collected using funding from the U.S. Government and can be used without additional permissions or fees. If you use these data in a publication, presentation, or other research product please use the following citation: Dreaden, Tyler J.; Smith, Katherine E.; Nelson, C. Dana; Coffey, Emily E. D.; Eserman, Lauren; Smith, Jason A. 2025. Microsatellite genetic variation data for endangered Florida torreya (Torreya taxifolia Arn.). Fort Collins, CO: Forest Service Research Data Archive. https://doi.org/10.2737/RDS-2025-0007

Temporal Extent Start Date

2008-01-01

Temporal Extent End Date

2024-12-31

Theme

  • Not specified

Geographic Coverage

{"type": "FeatureCollection", "features": [{"type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[-84.98152, 30.57257], [-84.98152, 30.49792], [-84.86316, 30.49792], [-84.86316, 30.57257], [-84.98152, 30.57257]]]}, "properties": {}}]}

Geographic location - description

Torreya taxifolia Arn. (Florida torreya) has a very limited native range in the USA, occurring in Gadsden County and Liberty County in Florida, as well as Decatur County in Georgia. Samples for th...

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

Forestry, Wildland Management

OMB Bureau Code

  • 005:96 - Forest Service

OMB Program Code

  • 005:059 - Management Activities

Pending citation

  • No

Public Access Level

  • Public

Identifier

RDS-2025-0007

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