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Microbiota of the Coffee Berry Borer (Hypothenemus hampei)

Name: Microbiota of the Coffee Berry Borer (Hypothenemus hampei)
Published: 2024-09-29T05:37:40+00:00
License: https://rightsstatements.org/vocab/UND/1.0/
Keywords: raw sequence reads

dataset

posted on 2024-09-29, 05:37 authored by University of Puerto Rico-Rio Piedras

The goal of this study was to determine the microbiota of the most devastating coffee pest Hypothenemus hampei and its variations due to environmental conditions (sun vs. shade coffee) and physiological conditions (diet and stage of development). Bacterial communities of field-collected and laboratory-reared eggs and adult females were characterized using Illumina-based sequencing of the hypervariable region V4 of the 16S rDNA gene. Understanding the role of the microbiota in this economically important pest may assist in the development of novel management strategies based on the manipulation of its symbionts.

Funding

USDA: 58-1245-4-083

USDA: 8272-0685-CA

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2017-03-07

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA378359

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA378359 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

raw sequence reads

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