Microbiome Disruption in Oak Trees Along an Urbanization Gradient

https://hdl.handle.net/10113/AF29964803
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posted on 2025-08-22, 03:35 authored by Boston University

This study investigated how urbanization disrupts the microbiomes associated with oak (genus Quercus) trees. We sampled microbial communities from four tree-associated compartments (leaves, roots, upper soils (0-15 cm), and lower soils (15-30 cm)) across an urban-to-rural gradient in Massachusetts and characterized them using 16S rRNA gene and ITS region amplicon sequencing.

Funding

DOE: DE-SC0020403

USDA: USDA NIFA 67003-26615

NIH: T32GM150533

NIH: T32GM100842

NSF: DGE 1735087

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2025-07-28

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA1297772 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."