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Metagenome sample, sequencing controls - corn and soybean rhizosphere microbiome and rotation length

dataset
posted on 2024-09-29, 06:25 authored by USDA ARS
Subset of controls used during library preparation and sequencing of corn and rhizosphere metagenome samples, as part of a rotation length experiment. Control samples were included in the library preparation and sequencing to evaluate resolution of OTU-calling platforms, potential PCR bias (with known community) and contamination (with empty wells, water and DNA extraction controls). Known community controls were generated in house with DNA extracts of known single isolates.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2020-08-11

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

metagenomics; sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA656563

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA656563 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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