Ag Data Commons
Browse

Meta-transcriptomic analysis reveals geographical expansion of known sugarbeet-infecting viruses and the occurrence of a novel virus in sugarbeet in the United States

dataset
posted on 2025-06-25, 01:59 authored by USDA, Agricultural Research Service
Total RNA was extracted from the hairy-root tissue harvested from beet samples each representing a pool of hairy roots obtained from four to eight beets and from the symptomatic leaf samples each representing portions of leaves obtained from four to eight sugar beet plants from California, Colorado, Idaho, Minnesota, and North Dakota exhibiting symptoms resembling virus diseases and 18 libraries were prepared using Ribo minus rRNA depletion RNAseq.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2024-05-02

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA1107161

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA1107161 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

Usage metrics

    Categories

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC