Mapping QTL for Phytophthora root and crown rot resistance in squash

dataset

posted on 2024-11-23, 22:06 authored by Cornell University, Cornell Institute of Biotechnology, University of Wisconsin Biotechnology Center

We used a biparental squash (Cucurbita pepo) population to map QTL involved in resistance to Phytophthora root and crown rot, caused by the oomycete pathogen Phytophthora capsici. Two approaches were used: bulk segregant analysis with whole genome resequencing (BSA-Seq) in a large F2 population and linkage mapping using a population of 176 F2:3 families.

Funding

USDA-NIFA: 2015-51181-24285

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2020-09-09

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA662576

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It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA662576 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

raw sequence reads eRawSequenceReads

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