Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES
This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are direct exports from Apollo 2.6 (https://doi.org/10.5281/zenodo.5015109), hosted by the i5k Workspace@NAL (https://i5k.nal.usda.gov/). Manual annotations are temporary and will be reviewed by the i5k Workspace@NAL and submitted to NCBI's GenBank database after review.
Resources in this dataset:
Resource Title: Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES.
File Name: Rhyzopertha-dominica-manual-annotations-presubmission.tar.gz
Resource Description: The files contained within this directory are manual annotations from the Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are direct exports from Apollo 2.6, hosted by the i5k Workspace@NAL. Manual annotations are temporary and will be reviewed by the i5k Workspace@NAL and submitted to NCBI's GenBank database after review.
- Annotations.cdna.fasta.gz: cDNA sequences of the manual annotations
- Annotations.cds.fasta.gz: coding (CDS) sequences of the manual annotations
- Annotations.gff3.gz: manual annotations in the GFF3 format.
- Annotations.peptide.fasta.gz: polypeptide sequences of the manual annotations.
- RdoDt3_Drdd8_decomES.fasta.gz: The genome assembly that the manual annotations are based on.
Funding
National Institute of General Medical Sciences: R01GM58634
National Human Genome Research Institute
Narodowe Centrum Nauki: 2017/25/B/NZ2/01880
Narodowe Centrum Nauki: 2019/35/D/NZ2/03411
Oklahoma Agricultural Experiment Station: OKLO2450
History
Data contact name
Oppert, BrendaData contact email
bso@ksu.eduPublisher
Ag Data CommonsIntended use
The data supports the annotations from the publication: Oppert, B.; Muszewska, A.; Steczkiewicz, K.; Šatović-Vukšić, E.; Plohl, M.; Fabrick, J.A.; Vinokurov, K.S.; Koloniuk, I.; Johnston, J.S.; Smith, T.P.L.; Guedes, R.N.C.; Terra, W.R.; Ferreira, C.; Dias, R.O.; Chaply, K.A.; Elpidina, E.N.; Tereshchenkova, V.F.; Mitchell, R.F.; Jenson, A.J.; McKay, R.; Shan, T.; Cao, X.; Miao, Z.; Xiong, C.; Jiang, H.; Morrison, W.R., III; Koren, S.; Schlipalius, D.; Lorenzen, M.D.; Bansal, R.; Wang, Y.-H.; Perkin, L.; Poelchau, M.; Friesen, K.; Olmstead, M.L.; Scully, E.; Campbell, J.F. The Genome of Rhyzopertha dominica (Fab.) (Coleoptera: Bostrichidae): Adaptation for Success. Genes 2022, 13, 446. https://doi.org/10.3390/genes13030446Use limitations
The annotations in this dataset were the result of an automated annotation by Dovetail Genomics with manual annotation from coauthors of the publication. The data will be submitted to NCBI and will be considered in their automated annotation pipeline.Temporal Extent Start Date
2022-03-04Theme
- Not specified
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-96.6297555,39.190887]},"type":"Feature","properties":{}}]}ISO Topic Category
- biota
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus terms
data collection; Rhyzopertha dominica; genome assembly; exports; genetic databases; insect pests; storage insects; Insects and Entomology; Biological SciencesOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
Primary article PubAg Handle
Pending citation
- No
Public Access Level
- Public
