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Malus domestica 'WA 38' whole genome sequencing

dataset
posted on 2024-06-11, 07:07 authored by Agricultural Research Service
The data submitted here were used to create a haplotype-phased, chromosomal level, genome of Malus domestica, 'WA 38', a new cultivar of apple released to market in 2017 as Cosmic Crisp (registered trademark). Using both short and long read sequencing our fully phased genome of 'WA 38' is about 650 Megabases, with a BUSCO score of 98.7% complete. The genome contains two haplomes (HapA and HapB) which are composed of 17 chromosomes each.

Funding

Agricultural Research Service, 2094-43000-008-000-D

Washington Tree Fruit Research Commission, AP-19-103

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2024-02-01

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA1072127

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA1072127 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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    Categories

    Keywords

    raw sequence reads

    Licence

    Copyright Undetermined

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