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Malus domestica 'WA 38' whole genome sequencing

Name: Malus domestica 'WA 38' whole genome sequencing
Published: 2024-09-29T05:05:52+00:00
License: https://rightsstatements.org/vocab/UND/1.0/
Keywords: raw sequence reads

dataset

posted on 2024-09-29, 05:05 authored by Agricultural Research Service

The data submitted here were used to create a haplotype-phased, chromosomal level, genome of Malus domestica, 'WA 38', a new cultivar of apple released to market in 2017 as Cosmic Crisp (registered trademark). Using both short and long read sequencing our fully phased genome of 'WA 38' is about 650 Megabases, with a BUSCO score of 98.7% complete. The genome contains two haplomes (HapA and HapB) which are composed of 17 chromosomes each.

Funding

USDA ARS: 2094-43000-008-000-D

WTFRC: AP-19-103

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2024-02-01

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA1072127

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA1072127 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

raw sequence reads

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