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Ldec_genome_annotations_BCM_version_0.5.3.tar.gz (200.01 MB)

Leptinotarsa decemlineata genome annotations v0.5.3

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posted on 2024-02-08, 18:51 authored by Sean Schoville, Yolanda Chen, Martin Andersson, Joshua B. Benoit, Anita Bhandari, Julia Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju Chen, Anna Childers, Christopher Childers, Olivier Christiaens, Justin Clements, Elena Elpidina, Patamarerk Engsontia, Markus Friedrich, Inmaculada García-Robles, Chandan Goswami, Alessandro Grapputo, Kristina Gruden, Marcin Grynberg, Bernard Henrissat, Emily C. Jennings, Jeffery W. Jones, Megha Kalsi, Sher Khan, Abhishek Kumar, Fei Li, Vincent Lombard, Xingzhou Ma, Alexander Martynov, Nicholas Miller, Robert F. Mitchell, Monica Munoz-Torres, Anna Muszewska, Brenda Oppert, Subba R. Palli, Kristen A. Panfilio, Yannick Pauchet, Lindsey Perkin, Marko Petek, Monica Poelchau, Eric Record, Joseph P. Rinehart, Hugh M. Robertson, Andrew J. Rosendale, Victor-Manuel Ruiz-Arroyo, Guy Smagghe, Zsofia Szendrei, Elise M. Szuter, Gregg Thomas, Alex Torson, Iris M. Vargas Jentzsch, Matthew Weirauch, Ashley Yates, George D. Yocum, June-Sun Yoon, Stephen Richards

The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents the Leptinotarsa decemlineata gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Leptinotarsa decemlineata genome assembly 1.0. Further annotation method details will be available in a forthcoming publication.

NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use:

Resources in this dataset:

  • Resource Title: Leptinotarsa decemlineata genome annotations v0.5.3 for genome assembly v1.0.

    File Name: Ldec_genome_annotations_BCM_version_0.5.3.tar.gz

    Resource Description:

    The attached tar.gz archive (Ldec_genome_annotations_BCM_version_0.5.3.tar.gz) contains the following files:

    LDEC.Analysis.gff3.gz. This file contains evidence gff3 format underlying the final gene predictions.

    LDEC.CDS.fna.gz. CDS sequences of Leptinotarsa decemlineata genome annotations v0.5.3.

    LDEC.faa.gz Amino acid sequences of Leptinotarsa decemlineata genome annotations v0.5.3.

    LDEC.fna.gz cDNA sequences of Leptinotarsa decemlineata genome annotations v0.5.3.

    LDEC.Models.gff3.gz Gff3 of all gene predictions of Leptinotarsa decemlineata genome annotations v0.5.3, modified by the National Agricultural Library to be compliant with gff3 specifications.


Data contact name

Schoville, Sean

Data contact email


Ag Data Commons


  • Not specified

Geographic location - description

Long Island

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Leptinotarsa decemlineata; data collection; genes; genome assembly; prediction; complementary DNA; nucleotide sequences

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Schoville, Sean, et al. (2017). Leptinotarsa decemlineata genome annotations v0.5.3. Ag Data Commons.

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